mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATGGGACGGAGGGAGTAGGC CTACTCCCTCCGTCCCATTGA AATACTGTCAGTAGAGCTCTGTACTACTCCCTCCGTCCCATTGAAAGTGTCGCCCGGGAAACGTGTTTGTGAGGGGGGCACGCTTTTCCAACGACACTTTCAATGGGACGGAGGGAGTAGGCCGAGAACTCAAACCACAAAA AACAGTAATACTGTCAGTAGAGCTCTGTACTACTCCCTCCGTCCCATTGAAAGTGTCGCCCGGGAAACGTGTTTGTGAGGGGGGCACGCTTTTCCAACGACACTTTCAATGGGACGGAGGGAGTAGGCCGAGAACTCAAACCACAAAAATGTCAGAGGCAGAGGCCGTGCGTGTGATCGGCCTATGGCCGAGCCCGTTCGTGATCCGCGTCCTGATCGCGCTGAAGCTGAAGGGCGTCAAGTACGAGTTCGTGGAGGAGGTGGTGGGCAAGAAGAGCGAGCTGCTGCTCAGGTCGAACCCGGTGCACAAGAAGATCCCCGTACTGCTCCACCACGGCAAGCCCATCTCCGAGTCTCTCATCATCGTGCAATACATCGACGAGGTGTGGTCCTCCGACGCGCCGGCCTTACTCCCCGTCGACCCTTACACCCGTGCGGTCCATCGGTTCTGGGCACAGTACGTCGATGACAAGGTCCCTTCAGCGATCCGCATACTCATGGGAACGGATGACGAGGGCAAAGACGAAGCGGCGGTGCAACTGTCCGCTGCCCTGCAACTGTTGGAGGAGGCTTTCGCGAACTTCACCAGGGGGAGCACTACTTCGGCGGC 2 0 3' arm Saccharum_officinarum mirnest 100 100 -70.7 ..((((...))))(((.(((...(((((((((((((((((((((((((((((...(((((((((((((.......))))))).))))))..)))))))))))))))))))))))))))))....))).)))........... (-70.7)