mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAGAAAAGATTGCTTCG TTTTTTTAATCTTTATGG ACAGAAAAGATTGCTTCGCAGTAAGTAAATATAACTTATTGCTTTTTTTTAATCTTTATGG 6 1 5' arm Ciona_intestinalis mirbase 100 100 -14.5 .((..((((((((....(((((((((.......))))))))).......)))))))).)). (-14.50)