mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATATTTTTAACGATTTTC CATCAAAGAAGTGTT AATATTTTTAACGATTTTCTCTTTCAGGCATCAAAGAAGTGTT 3 2 5' arm Ciona_intestinalis mirbase 100 100 0 (((((((((...(((..(((.....))).)))..))))))))) ( -2.50)