mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAATGTAAAGAAGTACGTTG ATGTGCCTCTTTACGTCCCCATA TTCGGCTGAGGCAATGTGCCTCTTTACGTCCCCATACGCAGCTCTGAGTCTATGGAATGTAAAGAAGTACGTTGCTTCTGCGGAG 2 1 3' arm Petromyzon_marinus mirbase 100 gga-mir-1a-1 0.00006 -40.8 .((.((.((((((((((((.(((((((((..(((((.((........)).))))).))))))))).)))))))))))).)).)). (-40.80)