mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCTTTATAAAGAAGTACGTGC CCATACTTCTTTACATTCCACG TGCTGATTCCCACCCAGAACCCATACTTCTTTACATTCCACGATCCCAGCTCGCGCACGTGGCTTTATAAAGAAGTACGTGCTCTGGCTGGGATTTATTC 7 1 3' arm Petromyzon_marinus mirbase 100 pma-mir-1b 1e-43 -33.5 ...(((.(((((.(((((.(.(.((((((((((....(((((......((....)).))))).....)))))))))).).).))))).))))).)))... (-33.50)