mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCAGCAAGTCGGCGTGGAAGG CTGGCTCACGCCGCCTTCTCTGC GGGCAGCAGCAGCAGCAAGTCGGCGTGGAAGGCGATGGTCGCCTTCGGCCTCCTCGCCCTGGCTCACGCCGCCTTCTCTGCCGCGCA 3 5 5' arm Petromyzon_marinus mirbase 100 100 -43.8 ..((.((.((((.((.(((.((((((((..(((((.((..(((...)))..)))))))....).))))))).))))))))).)))). (-43.80)