mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGGCTTTTTATTCCTTTT GGTGAAAGAGGGCTTGTGGGGAAAGGGACCTTTGCTTTGTTCTCTATGGCTTTTTATTCCTTTTGCT 15 0 3' arm Gallus_gallus mirbase mir-135 0.00001 cfa-mir-135a-1 0.0000007 -16.2 (((.(.(((((((....(((.((((....)))).))).))))))).).)))................ (-16.20)