mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAATGTTGGCTGGCTCGTAC GCGAGTAGGCGCGCATGTTCCCG GAAAGCTCTTGGGAATGTTGGCTGGCTCGTACGTCGGAGGAACCACTTGCGAGTAGGCGCGCATGTTCCCGAGACTGCT ATCAGAGATTTGCCACACCTTTACTTAGTTTGCCTTGATAAATTTAATCACCGGGTCAAACACGTCTTGCCTTGCTCGGGTTCCTACAACAAAATCCGCGTGAGCGTAGTTTGGAAGAAATAGTGTTTGCTGCGTGCAAACGAGGCGCTTGGCCAGTTCCTGGACGCCCTGTGGCGTAGACAATGTGTCCTTGCCTCCATACACGAGGAAAACTGGAAAGCTCTTGGGAATGTTGGCTGGCTCGTACGTCGGAGGAACCACTTGCGAGTAGGCGCGCATGTTCCCGAGACTGCTACCATAGTCGAACTTTGCAAACAAACCGGTTCTCACCACTGCCAAGAAAGAAAAAAAGAAAAAAAAAAATCAATAGCGTCGAGATTGCATCGGAAAAACAAAGAGCTTACTTTGAGCGAGGTGAACTAAGTTTTTCGTGGACGACCCTTGAGGCTCAAACTGGCGGTAGTAAGAAGTGAGGCTCGCGTTGAAGCAGCAATTCCGGCCCGTCACGAGGACCAGCAAGTCTGCGCATCGGGGGTCCAGCGAGCATAAATTCCTGAGAAGGTACGCACCAATTCCACTTTCAAGAGTGAATTGTGACAGGCCTACGTCGTCGTAGATCTGGTCCATGTAGAGTAGAGCAGCGAGCCTGGAAAGCGTGGAAGTCATGCCTTTGAGGTAGGCAATGGGACTGAGTAACACCGCCGCCCTGA 2 2 5' arm Selaginella_moellendorffii mirnest 100 zma-MIR166m 0.0009 -31.5 ...((((((((((((((((((((.(((((((.((.((.....)))).))))))).))).)).))))))))))))..))) (-31.5)