mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGGCTCTGCATCACCCCATGG TGGGGGTGCTGCGAAGCCTGCA GGAGCAGGAGGAGATGCCCTGGGGGTGCTGCGAAGCCTGCAGCCGCCCAGGGGCTGAGCTGGGCTCTGCATCACCCCATGGGCACTGCTCC 5 0 3' arm Gallus_gallus mirbase 100 100 -55.11 (((((((.......(((((..((((((.((((.(((((.(((((.(....))))))....))))).)))).))))))..)))))))))))) (-55.11)