mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGGGCAGAATGAAGGAGTCCCT AGACTTCATTTTATTTAATGTTCTCATT CACTAGTTTCATATCCAGAGGAAGACTTCATTTTATTTAATGTTCTCATTTCACTGAATAGGGCAGAATGAAGGAGTCCCTGCCTGTGGTGAGTGACAGTG 3 5 3' arm Gallus_gallus mirbase 100 100 -27.9 ((((.(((......(((.(((..((((((..(((((((..((((((.((((....)))))))))))))))))))))))....))).))).....))))))) (-27.90)