mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACCAAAGGCCTCTGCCCTTC AGGGCAGAGCTTTTGGTTTT ACTGGAGGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTTCATGTT CAATAGGCCTTAGGGGATTAACCTCTCATATAACATGTACATAGCTTATAAGTTATATGATGAGAATGTTCTTACATCAAAACCAAGATCATGTGAGAATGTCCTTTCACATAATCATGACATAGTGTAGGTTAGAGTACAATTGAAGAAACCTTTCAAGAGACTCTCATTCACTAGATTATCACTAACCTTCTTCATTCATACATTCATGTGTTTGTACATAAGTGAGAAAGCCTTTCAAAAGAACACCTTTAAACAACACATGTTCATACTTTATTAGTCATACACTTTTCATGCTTTATAAGATATTAAGGTGCAAATAATTATCCTTTCAATTAACGAGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGAGAGAAAAGCATATTGGCTAGTGATTGTGAGGCCCCAATTCTTAACTGGAGGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAATAATGGTTTTTTCGTGTTGTCAAAGATTTGAACAATGAAAATAGATGGCGAGTGCCTGATCGAATTGATCAGGTCATGTANGAACAGG 1 1 5' arm Solanum_lycopersicum mirnest 100 100 -35.6 ......(((((.(((((((((.(((((((((((.((..((.....))..))..)))))))))))))))))))).)))))..... (-35.6)