mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTTATCTAGCTGTATGA ATAAAGCTAGATAACCGAAAGTA GATGTTTCTGTCTTTGGTTATCTAGCTGTATGAGTGTTGTGGAGCCATCATAAAGCTAGATAACCGAAAGTAG 3 0 5' arm Taeniopygia_guttata mirbase mir-9 4e-18 mdo-mir-9-1 1e-24 -30.4 .......(((..(((((((((((((((.(((((..(((....)))..))))).)))))))))))))))..))) (-30.40)