mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCTTCATCATCATCTTTA AAGATGATGAAGAAAGGTGTAT TTGTGGATTTGGGTTTGAGACAAAGATGATGAAGAAAGGTGTATTGAGAAGTTCATCATCTTCATCATCATCTTTATCTTCAGCATCTTCAAGTT CTTTTCATATCCATTTCCTCCTCAATGGCCTTTCTTCTCCTCATCTATCCCCTTCTTTCCAACTCCACATCAAGCCTTTTGTTTTCTGGAAGAAACACGGATCTAACAAGCTCCATAACAATGTTCACATCTTTTGGGATTTTTCCAAAGCTAAATTCGGATCTGGCCCTGAACCTCGATCTGGATTCTACATGGCTGCTACCGTTAACGGAGAAATGGTTCTTCTCGTCGGCGATTTACTCAAAGAAGCTTATTCAAGGACAAGAGCTCGAAACAAGTACATGAACATGAACATGGTGCTGAGAAGGGAACATGTGTACTGTGGGAACAAACTGTACATAACAAAAGCAAAGTTTGGTGGAAAAGAAAGAGAAATCTCAATTGATTGCAGGATTGGGGAAGATCCAAGGTTGTATTTCAGTGTGGACAACAAAAGGGTATTGCAAATTAAGCACTTGAGATGGAAATTCAGAGGGAATGAGAGAATTGAAGTAGATGGGGTTGGAGTAGCGGTGTCATGGGATGTGTATAACTGGTTGTTTGATGATGATGAAGATGGTTATGCTTTGTACATGTTCAAATTTGAGAAATCAAGTTTGGATGAGGAGCAATTTAATAATAGTATGTGGTTCCAGCAATCTTGTGGATTTGGGTTTGAGACAAAGATGATGAAGAAAGGTGTATTGAGAAGTTCATCATCTTCATCATCATCTTTATCTTCAGCATCTTCAAGTTGTAGTAGCTCTGTAATGGAATGGGCAAGCACAGAAGAAAATGAAATGAAGGATCCCACTGGATTTTCCTTGCTGGTTTATGCTTGGAAGACCTGAAACATTAAGTTTTTACCTCATCCAATTCCCACGTAAAGTACATGTATACAATTTTTCCTCCTCCTACTATTCTGTTTTTGCCTTTGATTGCTTAGAAAAATACATACTAGTATTCTTCTTCATTGATTTTTACTTTATTTTGTTCACATTAGGCATCATTTTTGACTTAACAACATCAATATTGGAAAGTTAAAGCACAGGCCATTCCGTACCTAATGTTTTTGCGTGAGAGAGAGAATAGCATTCTTATTTTTCCTTAAACAATTTGAACCACTTAAACTTATGTAACCCAAAATACTGAAAAACATATACTCTCTTTTGGCAATTCAAAGCTCACTGAAAGTTACAACAGGATGCATGGTCTTTGGTCATGTCATCTTTAGTACACATTTTATCTTTATT 3 1 3' arm Solanum_lycopersicum mirnest 100 100 -29.6 (((.((((....(((.((((.(((((((((((.(((.((((...(((.....))).))))))).))))))))))).)))).))))))).)))... (-29.6)