mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGTATTGTTTCAGCTCATGT ATGTGCTGAAGGAGAATTTCTTC ACCTACACAGTGGGAGCATGTGCTGAAGGAGAATTTCTTCCATCCAGGCAAATAGGCGAAATGTGAACCATAAACTGGAAAGGTATTGTTTCAGCTCATGTTGCCTCAGAATGCTGATGCTTCTTGTAAATATGATATTATACATCCTCT ACCTACACAGTGGGAGCATGTGCTGAAGGAGAATTTCTTCCATCCAGGCAAATAGGCGAAATGTGAACCATAAACTGGAAAGGTATTGTTTCAGCTCATGTTGCCTCAGAATGCTGATGCTTCTTGTAAATATGATATTATACATCCTCTCCTCCCTAACCCTTTTCTGTATGTTCAATAATCTGCATATCGGTGATCAAGGAAACACACTGTGCCCCCCGATGGTGCTGTATGGAAGTAGTCTGGTTTGTCTGCATGGGTCTATGCCAAAGTTTATCTATAAACGGCACTTATATGTTCTGGACCGAGAGTGAATTACTGTATATATTTA 3 2 3' arm Sorghum_propinquum mirnest 100 100 -34.8 .(((((...))))).(((((.(((((((...(((.((((...(((((.........((.....)).........))))))))).))).))))))).))))).((.((((....)))).))....((((((((...)))).))))...... (-34.8)