mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCCTTCTCTCTCTGTCTA GGCAAGGAAGGAGGCCGAAAAT TTGTGGTCCGTGGGCAAGGAAGGAGGCCGAAAATTGCATCAATGCCCCTCCCTTCTCTCTCTGTCTATACCCCCCT GCACGAGGGCAATATCTGTCAATCCCCCCGGTTTTGTTTTCCTCTGTTGCAATCAGTAGCGTGTACCCTGTAGCTTCCACTTTCTTGCTGTGTCGTACTGTGATGGTGCAAAGAAGATCCCTGTTCCCCCTTTTAGATCACCTTTGTGCATGCTTTTTCTTGTGGTCCGTGGGCAAGGAAGGAGGCCGAAAATTGCATCAATGCCCCTCCCTTCTCTCTCTGTCTATACCCCCCTCATGCTGCATCACGATCAAGAGCATGTATGCAAGTTGGTCTTTCTAGGGATGGCGAACTGACCGGCGATTNTCTGGTTATTCGTCCTGCACGACATGGCGGACGCCGTCGACCGCTTGAAGACCGGGTTCAACAAGTTCAAGACCGAGGTCTATGACAAGA 5 1 3' arm Sorghum_propinquum mirnest 100 100 -17.8 ....(((..(((((((.(((.(((((..((.....(((....)))...)).))))).))).))))))))))..... (-17.8)