mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCATCATCATCATCATCGTCG ATTACATTGATGAATGATGATACAT CTACATAGTGATAATTACATTGATGAATGATGATACATAATGCAACTCGAGTCCCACCATCATCATCATCATCGTCGTCACCACCAA AAGGTGATGTTAAAATTCGATCATCGGAGCTTAAGAGTGCCCTCTGCAACCAGCAAGCTACATAGTGATAATTACATTGATGAATGATGATACATAATGCAACTCGAGTCCCACCATCATCATCATCATCGTCGTCACCACCAATATTACTAGTGAAACCAAACCCAGCAACTCTATCGTTTAGAAAAAACTACATTATTAGTGAAAGAATTTAGTGTTCTTTCACCGGCTTTTATGTGAACCCTAAGTATTAAAAGACACAAACCCCAACAAGAAAATGAAAATTAAAAAGCAAAAAAAAAAAAGAAGAACCAAAGATTAAACAAACTTGAACTCCCGGGTACTGAAAATTCCAAACCCGTATCCTGAAAAAATAATCTACGGGTTGGAAGTCGAGACGACCGGAGAATCCAATCGGAGCCATACGCCGAATCAGACTTGTGTTCGGAACCCAAAATAAATTATCAATCGAGACGAAGCAAGCGCCTCAGATCTCGCGTCGCGGTATCATCCAACGGCCGGATTTCACCGCCGTCAGTTTGCTGTTTTTTGTTGAAAAAGGAAGGCAGAGGGAGGGCGCGTGGAGACGGCGATAGAGAGAACGCCGACCCGGCGTACACGTCGTGAAAGGACGGCGGCGACAGGCGGATCTGCTTCGGCAGCATATCCGGCGACTCCGGTCCGATCCGCCTGGTCCCAGAAACGCCATGTCGTCGCCGGGTAT 5 1 3' arm Striga_hermonthica mirnest mir-598 0.00007 100 -15.3 .......(((((....((..((((((.(((((((........................)))))))))))))..)).)))))...... (-15.3)