mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCGTATCTAGA TAGATACSAATGCATCTAGA CTCCCTTCGAACCAAATTAGTTGACATCACTTTATCTAGATACSAATGCATCTAGATGAATTTTAGTGATAGATACATCCGTATCTAGAWAAAGCTGCSTCAAGTAAATTGGATCGGAGGAA ACGCCATCGGTGTGCCCGAGCCCTTGTCTGTGTTCGTCGACTCCTACGGCACCGGCAAGATCCCGGACAAGGAGATCCTGAAGCTGGTGAAGGAGAACTTTGACTTCAGGCCCGGGATGATCAGCATCAACCTCAACCTGAAGAAGGGTGGGAACAGGTTCATCAAGACAGCTGCCTACGGCCATTTCGGTCGCGACGACCCCGACTTCACCTGGGAGGTGGTGAAGCCCCTCAAGTTTGACAAGGCATCTGCCTAAAGAGCGTCTCCAACGTAAAAATAAGGTTGCCATAAGCTTCCTAAGGTCGACCGTAGCGAGACTTAAGCATTGTGTGCATCGGTCGTACGTACAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCMWAMMCATTATCTGATTTTTTACCMTTCCGGCACTCGAGTAAAAAAATTACTAATACTCCCTTCGAACCAAATTAGTTGACATCACTTTATCTAGATACSAATGCATCTAGATGAATTTTAGTGATAGATACATCCGTATCTAGAWAAAGCTGCSTCAAGTAAATTGGATCGGAGGAAGT 3 0 3' arm Agrostis_stolonifera mirnest MIR1122 0.0000002 far-MIR1122 0.0000002 -42.9 ...(((((((.((((.(((.((((...((((((.(((((((((..(((.(((((.....((....))..))))).)))..))))))))).)))).))..)))).))).)))).))))))).. (-42.9)