mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCGGAGGGATTCCTTCTTTG AAGCGTGGATTCTTTCTGGATG CTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA CCAAAACTGATTCAGCATGAATAGAAAACCAAATCCTTTTACTGATATAATCTTTTAACATAAAGTCCACTGAATCAGAACAGTTTTATCAAGGGGGAAGACAAAAAAAGAAAAGAGGCAAGCAAGATCAGATTGTTGAAATGAGTCTACTTGATCTTCTTCTTAGGCCTCAACTGGTTGCTATGGCCACATTTCTTCTTCCTGCAGTTCACGGCCCTTGGGTGAAGACGAGCGTAACACTTGCGGCAAATCATCTTGTCTTGGTTGTACTTACGAGCCAACGCCATCAAAGAAGGCTCAATGATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTTTTTAGTTCGTCTTCTATCCCGCC 3 1 3' arm Thellungiella_halophila mirnest 100 100 -46.7 ......(((......((((((((((...(((.(((((((((((...(((((..(((.......))).((((((..((((.....)))))))))).....)))))..))))))))))).)))..))))))))))......)))..... (-46.7)