mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCACACAGAAATCGCACCCGT GGGTGCTATCTGTGATTGAGGGACA GAACCTGGGCTCAAGGTGAGGGGTGCTATCTGTGATTGAGGGACATGGCAAATAGAATTGTCTCACACAGAAATCGCACCCGTCACCTTGGCCCGCCTA 4 6 3' arm Equus_caballus mirbase mir-342 5e-43 eca-mir-342 2e-51 -50.1 ......((((.((((((((.((((((..((((((.....((((((...(.....)...)))))).))))))....)))))).))))))))))))..... (-50.10)