mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GACCATTTTCGTTGCTCTCTT GAAGCACTGGTATTGGCGT ATCGCCTTGATGACCATTTTCGTTGCTCTCTTCCTCCCCGAAACAAAAGGAATTCCTCTCGACTCCATGAATTTAGTTTGGGAGAAGCACTGGTATTGGCGTCGGTTTGT CGGGCCCAAGTGAAATCTTCCCCATAAAAATTCGGCCCACGGGCCAAAGCATCAGCGTTGCCGTCAACTTTGCAACCACCTTTGTGCTGTCCCAAACCTTCTTGACCATGCTTTGCCACTTCAAATTTGGCACTTTCTTGTTCTACTCGGCTTGGATCGCCTTGATGACCATTTTCGTTGCTCTCTTCCTCCCCGAAACAAAAGGAATTCCTCTCGACTCCATGAATTTAGTTTGGGAGAAGCACTGGTATTGGCGTCGGTTTGTTCGTGGTTAAAAGCTAGCAATTAGTCGAGGCAATGAATGTTGGAAATGACAACTTCTCTTTTCTTTTCCTTGTCCATTGTTTCTTCCTTTTCATTTTTCTGCTTCTTCCTCAGGATCCAGGCCATTTGATTGCCACATTGAATTGGTGTGAATATTTATCACAATGGTGCCATAGCTGGTTCTCTAGATTAAAAAAAAAAAAGAAAA 4 2 5' arm Theobroma_cacao mirnest 100 100 -23.5 ...(((..((((.(((...(((.((((.((((((..............(((.((......)).))).............)))))))))).)))...)))))))))).... (-23.5)