mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGACAGATTGATAACTGAAA TCGGGGATCATCATGTCACGAG AGGACCTCAGACATCTCGGGGATCATCATGTCACGAGATACCACTGTGCACTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCC 7 0 3' arm Equus_caballus mirbase mir-542 2e-36 eca-mir-542 1e-43 -36.6 .((..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..)) (-36.60)