mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCCTC GGAATGAAGTTTGATCCAAGA GAGGGTGTATGGAATGAAGTTTGATCCAAGATCCCTCCTTCTCCATAAGTTCTTATCTGATAATTACTTAAGGGATTGATCATTGATCTCGGACCAGGCTTCATTCCTCACACCAT CGGGGATGAGAGAAAGAAAAGAGAGAAAGAGAGGCAGGGAACTTGAGGGTTTTGCAGCCTTGTTTGATTGTTGAATCATGAGAAAGTAGAGAAAGAGAAAGAGAGGGTCATTGAAAGAAGGAAAAGGGGTGTTCGGAATGAGAAGTTTGATCCAAGATCCTTGTCTCTGTCTCTCTTCTTTATATTGCTTGATTTGTGTGTGCATGCGTGTGTATATATACAAGATAAAGAGCCTTCTTTAGTTTTGATTGTTAAATCATGAAAACAAAGAAAGAGAAATGGAGAGATGAAGAGATATATCTTGAGGTATAGGGGAAAGGGGTGTTTGGAATGAAGCCTGACCCAAGATCCTTCTTCTTCCTTTCCATTTCTTGACCTTATGTTTTTGCATGTGTTTGAGAGGGAGACTAAGCAAAAGGATCATGATTCATGAGAGGAGAGGTAGAGAGCAAATAAGGAGGGTGAGACTAATCAAGAGTGTTATCTTGAAGAAGAAAAGAGGGTGTATGGAATGAAGTTTGATCCAAGATCCCTCCTTCTCCATAAGTTCTTATCTGATAATTACTTAAGGGATTGATCATTGATCTCGGACCAGGCTTCATTCCTCACACCATGC 4 0 3' arm Theobroma_cacao mirnest mir-166 0.000000002 tcc-MIR166c 2e-61 -41.2 ...(((((..(((((((((((((.(((.(((((..((..((.((.(((((..((((...))))..))))).))))..)).....))))).))).)))))))))))))..))))).. (-41.2)