mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCTTCTTCTTCCTCTTCAT GTTGAGGGAGAAGGCCGACTTG TGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCAC CTTCTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAAGCTGCAACACCATCATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCATGCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAACTTGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGAGCTGCTATTGAGTATGCAGTTCTGCATCTCAAGGTTTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCT 5 1 5' arm Trifolium_pratense mirnest 100 100 -21.7 .....((.((((.((.(((((((((((..((..((((........((((........))))....))))..))..)))))))))))..)).)))).)).... (-21.7)