mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCTTCTTCTTCCTCTTCAT GTTGAGGGAGAAGGCCGACTTG TGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCAC TAGCATTGTGGTTTGAGTCTTCATTGCCACAATGTCTACCTCTTCCATAAACGGCTTTAGTCTTTCTTCTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAAGCTGCAACACCATCATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCATGCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAACTTGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGAGCTGCTATTGAGTATGCAGTTCTGCATCTCAAGGTTTCCAACATTGTGGTCA 5 1 5' arm Trifolium_pratense mirnest 100 100 -42.7 .....((.((((.((.(((((((((((..((..((((...(((..((.((((....)))).))...((...(((((((.((...(((((((.((.(((((....)).)))..)).....)))))))....)).)))))))..)).)))....))))..))..)))))))))))..)).)))).)).... (-42.7)