mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTCTTCCTCTTCCTCTTCAT GGACACAATGGGAACAAGTG TGCATCAGCAAATGGACACAATGGGAACAAGTGAAAATAAAGAATTCAATTACGAGTGCGAAAAGTCATAGCCACCGCCCTGGCGTTCATTTCGGCCATTTGCATCTGAAACTGAAGAATCGCCATTTGATCCATCGCCTTGAGATTCGCCATTTGTAACTTCCTCACTTCTGATAATTCCCCATGATCTTCTTCCTCTTCCTCTTCATTATCTTCTTC TTTTTTTTTTTTTTTTTTTACAATTGAAAAGGGAATGGAAAATACAAACATACATATTGAAACAAATAGCAGTAGTTAACTCGTAAGAAAGCAACAGAACATTAGGGAATTGCAAACAAACTTAGAAGCTACAACAGTTAAACAAACAAACAAAGAGAAACAATAACATGCATCAGCAAATGGACACAATGGGAACAAGTGAAAATAAAGAATTCAATTACGAGTGCGAAAAGTCATAGCCACCGCCCTGGCGTTCATTTCGGCCATTTGCATCTGAAACTGAAGAATCGCCATTTGATCCATCGCCTTGAGATTCGCCATTTGTAACTTCCTCACTTCTGATAATTCCCCATGATCTTCTTCCTCTTCCTCTTCATTATCTTCTTCTTCCTCTCCCACTTCTTTAACTTCTTTTTCTTCGTCTACTTCTTCTTCGTCGTCGTCTTCTTCTACTTCATTAACTTCTTTTCCCACTTCACTAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCTTCCACTTCACTAACTTCTTCTTCTTCTTCCACTTCACTAACTTCTTCTTCCTCTTCCTCATCAAATGCACACTTTAAATGTGTAACAAAGTCACATTCCTTACAAAAATAAGTCGAATATCCTTCCGTAACATATCCTTCACACACATCACAATAAATCGTAGACTCCGACTCTGGTGTACAATGACGCAAAGCAAGCTCATG 5 1 3' arm Triphysaria_pusilla mirnest 100 100 -32.6 (((....)))((((((...((.(((((.(((..........(((((..((((.(((((....((((.(((((....))..(((((...((((((((....((.(((......(((....)))......))).))..)))..))))).)))))..))).))))...))))).)))))))))........))).))))).))....))))))......... (-32.6)