mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTAAACATCCTACACTCTCAGC TGGGAGAAGGCTGTTTACTCT AGATACTGTAAACATCCTACACTCTCAGCTGTGGAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCTCTCT 3 2 5' arm Macaca_mulatta mirbase mir-30 1e-24 ssc-mir-30c-2 2e-35 -24.54 (((....(((((((.(((...(((((((((..............))))))))).))).)))))))....))) (-24.54)