mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTGTGGAAATGCTTCTGCTA AAAGAAAACATTTCTGCACACAC AATCTAAAGAAAACATTTCTGCACACACACCAGACTATTGAAGCCAGTGTGTGGAAATGCTTCTGCTACATT 7 1 3' arm Macaca_mulatta mirbase mir-147 3e-34 mne-mir-147 2e-35 -17.45 .......((((..((((((..(((((....................)))))..)))))).))))........ (-17.45)