mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGTGGAGTGGACTGGAGT TTTTTACTACTGTACTCTACT TGCTCAGCCAGTGGAGTGGAGTGGACTGGAGTCCTACTTTTTACTACTGTACTCTACTAGGTGTGG TTCGGCACGAGCCGGCTGCAGCGGAGGAGGCACCCGCGGCCGCGGCAGAGGAGCCGGCCGACGCCGTGGCCAGCGTCAGCGTGTGAGGCGCCGGTGCGCGCGGAGGAGGAGCTGGCTGGGTCAGCGTCCACGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGTGATGCTCAGCCAGTGGAGTGGAGTGGACTGGAGTCCTACTTTTTACTACTGTACTCTACTAGGTGTGGAGTGGAGTGGAGTGCTATGCGCGGGGTCGCGTGACGTGGGCTAAATAAAAGTGTTGTCGGTGAGCATCGAGCGAGCGACGCAGTGCCACTCTAGATAATGTATGCCTTTTATTTTGTCGATAAGACATGATTCATT 4 0 5' arm Triticum_monococcum mirnest 100 cre-MIR1171 0.0007 -22.4 ......((((((((((((.(((((...(((((...)))))...))))).))))))))).))).... (-22.4)