mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCCGTAAAGAAATATAA AACATTTCTTTACAGAGGGAGT TTCTACAGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTGATCTAAACACTCTGAACATTTCTTTACAGAGGGAGTACATATAT TGGAAAGCTCAAACCCTGCCATATATTCTGACTAGAATCGTGTCTTATTCCGCTTTCAGTTTTTTCTACAGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTGATCTAAACACTCTGAACATTTCTTTACAGAGGGAGTACATATATATGCCGGTCAGCTTTAGTCTATTTGAAACCATGTTAGCATTCTATTGCAGACTTGCAGTGCCCTGTCTTACTGGTGGTGGTGAAGTATCAGGTAAACTAATGCCTACTAGCGGGCGGAGGCGCGTGCCGCCGCGCTCGTCAGTAAGCCTGAGATAAAAAAAAAAAAAAAAAAAA 4 0 5' arm Triticum_monococcum mirnest MIR1122 3e-23 tae-MIR1121 3e-41 -48.6 .......((((((((((.((((((((((...((((.(((((((((((((...))))))))))))).))))....)))))))))).))))))))))...... (-48.6)