mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATTTCTTTACAGAGGGAGTA CTCCCTCCGTAAAGAAATATA TTTTCTACAGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTGATCTAAACACTCTGAACATTTCTTTACAGAGGGAGTACATATATAT TGGAAAGCTCAAACCCTGCCATATATTCTGACTAGAATCGTGTCTTATTCCGCTTTCAGTTTTTTCTACAGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTGATCTAAACACTCTGAACATTTCTTTACAGAGGGAGTACATATATATGCCGGTCAGCTTTAGTCTATTTGAAACCATGTTAGCATTCTATTGCAGACTTGCAGTGCCCTGTCTTACTGGTGGTGGTGAAGTATCAGGTAAACTAATGCCTACTAGCGGGCGGAGGCGCGTGCCGCCGCGCTCGTCAGTAAGCCTGAGATAAAAAAAAAAAAAAAAAAAA 2 0 3' arm Triticum_monococcum mirnest MIR1122 3e-23 tae-MIR1121 8e-42 -48.6 .........((((((((((.((((((((((...((((.(((((((((((((...))))))))))))).))))....)))))))))).))))))))))........ (-48.6)