mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACATGGTTGGCCCATGGAA CAGTGGGTTCAATCATAAGTG CTTTCACTTTCAGTGGGTTCAATCATAAGTGTGCCTGGAACGGGCCATGACATGGTTGGCCCATGGAATCCGTAGTC CTTTCACTTTCAGTGGGTTCAATCATAAGTGTGCCTGGAACGGGCCATGACATGGTTGGCCCATGGAATCCGTAGTCCATACCTGCCCGGGCG 3 2 3' arm Triticum_turgidum_subsp._durum mirnest 100 100 -24.2 .....((.(((.((((((.(((((((..(((.(((((...))))))))...))))))))))))).)))...)).... (-24.2)