mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAATGGTTCCCTTTAGAGTGT CCTCTAGAGGGAAGCGATTTCT TCTCAGGCTGTGACCCTCTAGAGGGAAGCGATTTCTGTGATCTGAAAGAAAAGAAAATGGTTCCCTTTAGAGTGTTACTGTTTGAGA 3 0 3' arm Macaca_mulatta mirbase mir-515 5e-43 hsa-mir-522 5e-30 -41.9 ((((((((.(((((.((((((((((((.((.(((((....((.....))..))))).)).)))))))))))).))))).)))))))) (-41.90)