mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACGTGCATCCCTTTAGAGGGTT CCCTCTGGAGGGAAGCGCTTTCT CATGCTGTGACCCTCTGGAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGAACGTGCATCCCTTTAGAGGGTTACTCTTTG 2 0 3' arm Macaca_mulatta mirbase mir-515 2e-39 hsa-mir-519b 8e-29 -41.8 ......(((((((((((((((((.((((.((((....((.....))..)))).)))).)))))))))))))))))...... (-41.80)