mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAGGATTCTGCTGTCGGTCCCACT TGGTGGGCACAGAATCCGGACT ACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTGCATAGAATGGGTGGTGGGCACAGAATCCGGACTCTGCTTGTG 5 3 5' arm Macaca_mulatta mirbase mir-541 4e-28 hsa-mir-541 2e-35 -31.2 (((.(((((...((((((((.((((.(..((((.(((............)))))))).))))))))))))...)))))..))). (-31.20)