mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGGGATCATCATGTCACGAGA TTGTGACAGATTGATAACTGAAA CAGACCTCAGACATCTCGGGGATCATCATGTCACGAGATACCACTGTGCACTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCCATTCATCTTCA 6 0 5' arm Macaca_mulatta mirbase mir-542 5e-37 mml-mir-542 3e-50 -34.3 .....(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))............... (-34.30)