mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTCTGCATTTTTAGCAAGTTC TCTTGTTAAAAAGCAGATTCT ATTTTCATCACCTAGGGATCTTGTTAAAAAGCAGATTCTGATTCAGGGACCAAGATTCTGCATTTTTAGCAAGTTCTCAAGTGATGCTAAT 2 1 3' arm Macaca_mulatta mirbase mir-544 5e-37 hsa-mir-544 1e-46 -32.6 .....((((((...((((.((((((((((((((((.(((..((....))...))).))))).))))))))))).))))..))))))..... (-32.60)