mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTAGTCCTGACTCAGCCAGT TGGCAGTGGGTCAGGGTTCATATTTTGGCAT ACCTGAGTAACCTTTGCTAGTCCTGACTCAGCCAGTACTGATCTTACACTGGCAGTGGGTCAGGGTTCATATTTTGGCATCTCTCTCTGGGCATCT 0 10 5' arm Macaca_mulatta mirbase mir-554 2e-48 hsa-mir-554 1e-37 -32.5 .((.(((.......((((((((((((((((((((((...........))))))..))))))))))........)))))).....))).))...... (-32.50)