mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATATTACAATTAGCTGATCTTT AGATGAACTCATTGTAATATGA GATAGTAATGAGAAAGATGAACTCATTGTAATATGAGCTTCATTTATGCATTTCATATTACAATTAGCTGATCTTTTTTTTT 3 0 3' arm Macaca_mulatta mirbase mir-556 1e-34 mml-mir-556 5e-36 -21.9 .........(((((((((.(.((.((((((((((((((.........))...)))))))))))).)).).)))))))))... (-21.90)