mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGCTGACATACATTTCCC GAAATGTGTGTTGCTCTGA AGCAAAGAAGTGTGTTGCCCTCCAGGAAATGTGTGTTGCTCTGATGTAATTAGGCTGACATACATTTCCCTGGTAGCCA 1 2 3' arm Macaca_mulatta mirbase mir-563 2e-38 ppy-mir-563 2e-35 -28.2 ..........((.((((((.....(((((((((((((((.(((((...))))))).)))))))))))))..)))))))) (-28.20)