mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAGTTGGCCACCTGGGTGAG CCTCAGTAAGGCCAACCTCCA GGAACTGCTTCATAATCCTCAGTAAGGCCAACCTCCATGCACCATTTTCTTGTCTGTAGCCATGTCTGTGGGCTGTGGAGTTGGCCACCTGGGTGAGGGCCTGCTTTTTC 3 3 3' arm Macaca_mulatta mirbase 100 ppy-mir-571 1e-19 -36.82 ((((..((.......(((((((...(((((((.(((((((.((((...(.((.(....).)).)...)))))).))))))))))))..))))).))......))..)))) (-36.82)