mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCATCTGTAAAGAAATATGA ATATTTCCTTGCGGAGNAGT TATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTTGCTTTTATATTTCCTTGCGGAGNAGTAGTTTCT GAATTCGGCACGAGGCACAAGCTAATCAAGCTCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCGAAGCACTAGATCCTCGATGGCTCGCGTGGCACTGGTCCGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTCGGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCCTCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTCCCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCCACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTTAATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGTTATCTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTTGCTTTTATATTTCCTTGCGGAGNAGTAGTTTCTTGCCGCATGTTGCTGCTGGAANTAGCAGTTTAT 3 1 5' arm Triticum_turgidum_subsp._durum mirnest MIR1122 0.00000000008 tae-MIR1121 0.00000000002 -31 ...((((((((...(((((((.((((((((((((((..(((....)))...)))))))))))))).)))))))..)))))))).. (-31)