mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGGCAGGGCCCCCGCTCCCC CCCCAGGAGCGGGGCCTGGGCAGCCC GTGGGGTGTGGGCCCGGCCCCAGGAGCGGGGCCTGGGCAGCCCCGTGTGTTGAGGAAGGAAGGCAGGGCCCCCGCTCCCCGGGCCTGACCCCAC 4 7 3' arm Macaca_mulatta mirbase mir-940 3e-47 hsa-mir-940 5e-46 -60.9 (((((((.(((((((((.....((((((((((((..((..((((.........))..))...)).))).))))))))))))))))))))))))) (-60.90)