mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGAGCCCCTGTGCCGCCCCCAG GGGGGGGAGAGGGACACGCCCTGGGCTCTGCCCAGGGTGCAGCCGGAC GTGGGTACGGCCCAGTGGGGGGGAGAGGGACACGCCCTGGGCTCTGCCCAGGGTGCAGCCGGACTGACTGAGCCCCTGTGCCGCCCCCAG 2 31 3' arm Macaca_mulatta mirbase mir-1225 3e-32 mml-mir-1225 1e-33 -50.4 .((((.....)))).(((((((((.((((...((((((((((...))))))))))..(((((.....))).)))))).).)).)))))). (-50.40)