mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGCCGTTCTCCTCTGGCACT TGTCGGAGGCGAACGAGAGCG CTCGGTGGTGTCGGAGGCGAACGAGAGCGAACTTCCGGAGGTTTCGATCAACTCCGACGACCCAGTGGCGCTGCCGTTCTCCTCTGGCACTACCGG TCTCTCTGTGCCACCATGATCTCCATTGAAACCCAGAACCCGGATGTTTCCAACCTTGACACTAATCACTCTATCCCCAAAATGGCCAATCGAATTGACGACCATGTTTTCAGATCAAAACTCCCTGAAATTCCCATCTCCAACCACCTCCCTCTCCACACCTACTGCTTTGAAAACTACTCCCAATTCGCCGATCGTCCATGCTTGATCGTCGGATCCACCAACAAAACCTACTCCTTTGCAGAAACCCACCTCATTTCTCGCAAAGTCGGAGCTGGGTTCGCCCACCTCGGCCTCAAACAGGGAGACGTCGTCATGATCCTCCTCCAGAACTGCGCCGAATTCGCGTTCTCCTTTCTCGGAGCTTCCATGGTCGGAGCCGTCACCACCACCGCCAACCCCTTCTACACTTCGGCCGAAATTTTCAAGCAGTTGAATGCTTCCAAGGCGAAAATCGTCGTCACGCAGGCGCAGTACGTCGACAAGCTCCGGGACTACCCCGACGGACAGGTGGCAAAGATCGGAGAAGGTTTCACCGTCATTACCATAGACGATCCGCCGGAGAACTGCATGCATTTCTCGGTGGTGTCGGAGGCGAACGAGAGCGAACTTCCGGAGGTTTCGATCAACTCCGACGACCCAGTGGCGCTGCCGTTCTCCTCTGGCACTACCGGGC 3 0 3' arm Vitis_shuttleworthii mirnest 100 100 -44.7 .((((((((((((((((.(((((..((((.((((((((((...........)))))..))...)))..))))..))))).)))))))))))))))) (-44.7)