mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGTTGGACTCTCTTTGTAAA GACAAAGGGTTTCTCACAGAG TTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACC TCTCTCTCCGTCTGCCTGTGTTTTCAATGGTGGATGAATACAAGGACGCTGTTTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAACCAAGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACCCCCCAACACCATGTCCAATCTCTCTAGCTTTTCCACTCTAGAGCATCAAGGTGAAAACCCCATACACACAACCCCATCTCCTTTTTGCTTGTTTTCTCTTATGATGCATCATATACACTGCCAGTTTCAGTTATTTATTTATTTTTTATATCTGGCCTCTTTCATCATCCACAACTTCAGTGGTTCTCTCTTTTGCAAAAAAAGAGAGAAACCATTAATAATGAAAAAGGGTTATTCTCCTTGCTACTTTTCTTCTTTGATCCATCTTTTGCAGGCTCTGATTCTCATCTTGTACTGCAATTTCCGTGTATATGAGACTGACTTCAAACTTCTGAGAAACCCTAGTTTTCTGATCTGTCATATTATGGTTTTTCTCAGTCTGATGTTACACTCTTTTTCTCTTGTGTTGCAGGGGTTTCATCAACTCCTCCTCTTTGGCTCTTTCAAGCCAAGCCATGAAGGGTTCACGATCAGGCAAACCAGATGCATCA 4 0 3' arm Vitis_shuttleworthii mirnest MIR394 2e-49 vvi-MIR394b 1e-47 -63.3 .....((((..((((((.((((((((..(((.(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))))))...))))))..))))))))).)))..)))))))).))))))..)))).... (-63.3)