mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCTTCTTCTT GAAGAAGAGGAGGAACGAGATT GAGGAAGAAGAGGAGGAACGAGATTTAGCAGAAGAAAGAGCTCATTAGATTCCTCTTCCTCTTCTTCTTCTTCTTCTTTTG GAGGAAGAAGAGGAGGAACGAGATTTAGCAGAAGAAAGAGCTCATTAGATTCCTCTTCCTCTTCTTCTTCTTCTTCTTTTGTTTTATTCTTCTGTATTTTTGGAAGCTATCTGGTTTTTTCGGATGGGGAAATTGTTCGAAGGACCTCTCGTCGAAGAATTCAGGCCTCCTCAGGCCACTCAGCAGGGGAGTTCAGTCGTGTCTTCTGTGGCTATTCAGGTCTGGAGAGAGCCTTTGTCGAATCTGGAAGAAAATGAGCCCAAGGTCGAATGGGAATCCGTTAATGGACTAACAGAAGAACAGAAAAAGGCTCTTTCGAGACTGAGCAGCCGCGGCGTGTACTGGAAGCATCCTTCCGAAGCCTTCTCTTCGCTGTTTTTTCTTTACCACGGCGGCGACGTGGAAGCGGACGGGAATTGCTTGTTTTCTGCGGCTCAGCGCGCGTTGAGGTTGAGCCAGGGATCTGCAAGGGATCTTCGGATCAGAGTTGTTCAGCGATTCCTTGAGAGATACGATTCGCTCTCGTTTGCGGAAAGGGAGAATGTTGATCGAGCTGTTAAGCATCTCTATTCGCCAGATCTGCAGGCCGGCTGGGGCGTGCATTTTCTGCAGGAGGTCAAGCTTCTTGCTTCCAAATCCGATCGCGCGACGCTTGATGGACTTATTGAGGATCTTGTTCGGGTCGGCATGGAACGGGAGGTCGCTGCAGAGTCAATTTACAAAGAGAGGTGCATTTCTGTAGACGATGGAGCTAGTTGGGCAAAGTATATGTCTGTGAGTGGAAGCCCAGAAGACAAATATGATATAATCACTTTGCAATATGCCCAGGATGGCCTTTTGAGC 1 1 3' arm Welwitschia_mirabilis mirnest 100 100 -29 ((((((((((((((((((.(((((((((..((.........)).))))))..)))))))))))))))))))))........ (-29)