mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCTTGCAGCAGCAACGGGC TCCTTGTACTCGTACGCCACC ATGAGGACGGGGATCTTCTTGTGGACGGGGTTGGCTTGCAGCAGCAACGGGCTCTTGTTGTCCAAGTCCTGCTCCTTGTACTCGTACGCCACCCCTTTCTCCGCCAGCGCGATCCGGCACC TGAGGATTTTTCTAAATAAATAAGTCTTTTTATTGACTCCTCCTACCACGAACACAGCCAGTGCGACTCCAACGAAGTAGCCACACAGCATACGACACGTACCAACAAACTATTGACTACGCTGACAATATCGAAAAAAAATAACGGAAAAGAGTCCAGAAACGTTGACTCAAGAAGGATTCCATTGAGACTACTCGAATCCGTACGCCTGCTTCAAGGTCTCGTAAACCTTGACCGGGTCGTAGAACGCCTTGGAGACACTCTCCCTCTCCAAGCACCGTTTGCCCCACGCCACCAACTTCGGTGCCTCCGCCTCGACGCTGAAACCACCGCAGGTCTCGAAGGTGTAGAACCAGGCGCAGAAGGGAACCAGCGCAATGTCGACGTAGCCGAAAGCGTCGCCGCCGAAGTACTTCTTGTCGCCCAGCTCAGCCTCCAGGACCTTCAGGATCTCGATGAACTCTTTCTTGGCCTCCTGATGGGCCTCTCCCTTCAGCTTCCACAGCCTGGTTCCGTACTCGTAAATCTTTTTGTCAATGAAGTCGCCCCAGAAGCGCGCCTGGGCGCGGGCGTAGGGGTCCGCCGGCAGAAGCGGTGCGCCATCGGACCACACCTCGTCGATGTACTGCACGATGATAGCGACTCGCACACCGGCTTGCCGTCGTGGATGAGGACGGGGATCTTCTTGTGGACGGGGTTGGCTTGCAGCAGCAACGGGCTCTTGTTGTCCAAGTCCTGCTCCTTGTACTCGTACGCCACCCCTTTCTCCGCCAGCGCGATCCGGCACCGCTGCCCGAAAGGACTCACCCACAGATCCAGTAACACCACCGCCTCTGCCATGGT 3 2 5' arm Zingiber_officinale mirnest 100 100 -37.5 ..........(((((..((.(((((.((((.((((.(((((..((((.((((.((((.....))))....)))).)))).)).))).)))).))))...))))).))...)))))...... (-37.5)