mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA ATTTTGAAATGTTGAGAGG TGACAAGAATCTGATTTTGAAATGTTGAGAGGCGACAAAAGGCTGTTCTTTATTAGTATCATCATCATCATCATCATCATCATCATCAT TGATTGCCACTTGCAAGAGTAAATAAAATACACATGTAAAGAATGACAAGAATCTGATTTTGAAATGTTGAGAGGCGACAAAAGGCTGTTCTTTATTAGTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAGTCAAGTGATGTTAAAGCATTATGGACCGAACTGAAGGAAAGATAAAATGAGGATTTTTTCAACCACTGAAGCTTAATAAACCTTCAATTCATTAACCCTGCTCCTACCAGTACCATAATACATAAGCGTCCTGATAATGTTATTAGTCATCAGAGGGCAACTGTATAGAAACAAATTCTACATATCAGATGATCATCACATCCGTATCAAGATTGAAGACCAATCTCTTGGCAGCGGAACTAATCTACTAGTACATCGCACCTAGTCCTAAAGCAGGATGCGTTATCAATAAACTACAATGAGAACATTTAAGTCTTNANCTCCGCCCTACCCCAAATCCAGCTTAACNATAGATGCTGGAAAAGACCAAGTGCGATTAAACTACCCATCCTGCCCCTTCATGCCCTATCTTGTTCTACGCTTACATGACCACTNTTAGGTAATATTTNCACNTCAGNNCTTGTGCTTCGCGNACACGTGCACCAACTACCAACAGA 4 2 3' arm Zinnia_violacea mirnest 100 100 -10.3 ...........((((..(((.(((.(((((.((....(((((....)))))....)).)).))).)))..)))..)))).......... (-10.3)