mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAAGAATTGTAAAGAGGGGAT TCCCTCTTCATTTTCTTCCC AAAATATCCCTCTTCATTTTCTTCCCATCCTCGTCCCACCTGGAATTCGGAATCCCATCAAACTCGAGATTCCACAAATCACTGACAGAACTCCATTCCCTTGTGCCTGATTCGCATCGTTTTGATGCAATCATCATCGTCCGATCCACCTAATGTCCCCGGCTGATCGGGCGACTGGTCAAAATAAAAGAAAAGAAAGAAAGCATTCTTACGGTCTGCCTTAACACGACGCGGAAGAATTGTAAAGAGGGGATAAA GATCTCGATGATTAAATTTCCTTAAAATATCCCTCTTCATTTTCTTCCCATCCTCGTCCCACCTGGAATTCGGAATCCCATCAAACTCGAGATTCCACAAATCACTGACAGAACTCCATTCCCTTGTGCCTGATTCGCATCGTTTTGATGCAATCATCATCGTCCGATCCACCTAATGTCCCCGGCTGATCGGGCGACTGGTCAAAATAAAAGAAAAGAAAGAAAGCATTCTTACGGTCTGCCTTAACACGACGCGGAAGAATTGTAAAGAGGGGATAAAAC 4 1 3' arm Bruguiera_gymnorhiza mirnest 100 100 -58.1 ......((((((((.((.(((((((..(((..((...))..)))....((((((...((......))))))))...(((((...((((............))))...))))).((.((((.((((.(((...(((.((((((((((..((..........))..))))))))))((..((.........))..)).(((((....)))))..))).))).)))).)))).)))))))))..)).))))))))..... (-58.1)