mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTCGCATGCTCCGGCCGCCAT GGCGGCCGCGGGAATTCGATTA ATAGGGCCGACGTCGCATGCTCCGGCCGCCATGGCGGCCGCGGGAATTCGATTAAGCAGTGG TGGATCGTACTTGGCAGGATGAATAGGGCCGACGTCGCATGCTCCGGCCGCCATGGCGGCCGCGGGAATTCGATTAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTGTTTTTTTTAGTAGTTTTTCTTGTAAAGTAGAAGGAGGTAATATATTTATAGAAAGTTATTAGCCGTGAGGCCAACATTAAGTTGGCACCATTTTAGCGAGGTTATGGGTTCAAGTTTTTTGAATCCCAAGATTAGTGAAAAATTATTGGGTTAACCGGAGGATAAGTGTTGGGGTATGGATAACCAGTGTGGTTAAGAAGAAGGAGTAAAATTTGCGCGGAAAGAGTAC 5 1 5' arm Cajanus_cajan mirnest SSU_rRNA_eukarya 1e-17 100 -21 .....((....((((.((.((((((((((....))))))).))).)).))))...))..... (-21)